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Welcome to karyohmm's documentation!
====================================

Karyohmm is an HMM-based model for aneuploidy detection in PGT-A datasets.

Karyohmm implements methods for haplotype based analyses
of copy number changes, crossover recombination, and phasing
from array intensity data when parental genotypes are available.

Implementation of read-based methods to support NGS-based PGT-A is a work in progress.

.. toctree::
   :maxdepth: 4
   :caption: Contents:

   karyohmm


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`