pGermlinePoly API Reference
===========================

This page documents the public API of the ``pGermlinePoly`` package.

Inference
---------

.. autoclass:: pGermlinePoly.pGermlinePoly.ProbGermline
   :members:
   :show-inheritance:

.. autoclass:: pGermlinePoly.pGermlinePoly.MutectLOD
   :members:
   :show-inheritance:

.. autoclass:: pGermlinePoly.pGermlinePoly.BetaOverdispersion
   :members:
   :show-inheritance:

Simulation
----------

.. autoclass:: pGermlinePoly.pGermlinePoly.ClonalSim
   :members:
   :show-inheritance:

I/O Utilities
-------------

.. automodule:: pGermlinePoly.io
   :members:
   :show-inheritance: