Contributing

For developers, if you would like to contribute back to this repository, consider forking the original repo and creating a pull request:

1. Fork the original repo to a personal or lab account.

2. Clone the fork to your local system, to a different place than where you ran your analysis.

3. Copy the modified files from your analysis to the clone of your fork, e.g., cp -r workflow path/to/fork. (Make sure to not accidentally copy config file contents or sample sheets. Instead, manually update the example config files if necessary)

4. Commit and push your changes to your fork.

5. Create a pull request against the original repository.