Software

geovar

GeoVar is a software tool for coarse-grained visualization of multi-population patterns of allele sharing in python. If you use this package please cite this paper

qtl-power

qtl-power is a python package that allows for easy calculation and plotting of power for genome-wide association studies (GWAS) under a number of experimental settings. Some features of this package are currently more experimental (e.g. burden-testing power estimation).

Olink QC Pipeline

A small workflow I wrote while in industry to support automated QC of Olink targetted proteomics data for downstream applications.

haplotype-phasing

A workflow for performing reference-based (and within sample) haplotype phasing using pre-existing software as a prior step to imputation.

arjun_plot

A collection of plotting utilities and functions for matplotlib that I have accrued over the years. Most of the routines are inspired by having to remake plots for publication or common plots useful in statistical genetics.