geovar.GeoVarPlot

class geovar.GeoVarPlot

Class for a GeoVar plot.

__init__()

Initialize plotting object with default fields.

Methods

__init__()	Initialize plotting object with default fields.
add_cmap([base_cmap, str_labels, lbl_colors])	Create a colormap object to use.
add_data_geovar(geovar_obj)	Add in data directly from a GeoVar object.
add_data_jsfs(jsfs)	Add data from a joint SFS via numpy.
add_poplabels(popfile)	Add population labels from a file for GeoVar plot.
add_poplabels_manual(poplist)	Add list of population labels manually.
add_text_data(inputfile[, filt_unobserved])	Add/replace data for a GeoDistPlot object.
filter_data([max_freq, rare])	Filter geovar data for easier plotting by removing some lower-frequency categories.
plot_geovar(ax[, pixel_thresh, freq_thresh, ...])	Make a geovar plot on a particular axis.
plot_percentages(ax[, pixel_thresh, ...])	Generate a plot with the percentages.
reorder_pops(new_poplist)	Reordering populations within a GeoVar instance.
set_colors(colors)	Add custom hex colors for GeoVar plot.
sort_geodist()	Sort the geovar codes according to abundance.